uniprot的简单客户端库
proteo的Python项目详细描述
蛋白质组
一个简单的python库，用于处理uniprot，universal protein resource。
安装
pip install proteo
用法
fromproteo.uniprotimportUniprotClient# Initialize a clientu=UniprotClient()# Use the get_protein method to retrieve a protein record by accession numberaccession_number="B5ZC00"response=u.get_protein(accession_number)# Protein data is returned as a dictionaryprint(response['gene'])#glyQSprint(response['recommended_name'])#Glycine--tRNA ligaseprint(response['sequence'])#MKNKFKTQEELVNHLKTVGFVFANSEIYNGLANAWDYGPLGVLLKNNLKNLWWKEFVTKQKDVVGLDSAIILNPLVWKASGHLDNFSDPLIDCKNCKARYRADKLIESFDENIHIAENSSNEEFAKVLNDYEISCPTCKQFNWTEIRHFNLMFKTYQGVIEDAKNVVYLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNEITPGNFIFRTREFEQMEIEFFLKEESAYDIFDKYLNQIENWLVSACGLSLNNLRKHEHPKEELSHYSKKTIDFEYNFLHGFSELYGIAYRTNYDLSVHMNLSKKDLTYFDEQTKEKYVPHVIEPSVGVERLLYAILTEATFIEKLENDDERILMDLKYDLAPYKIAVMPLVNKLKDKAEEIYGKILDLNISATFDNSGSIGKRYRRQDAIGTIYCLTIDFDSLDDQQDPSFTIRERNSMAQKRIKLSELPLYLNQKAHEDFQRQCQK
响应字典
蛋白质应答词典包含以下内容：
| Key | Meaning |
|---|---|
| gene | The gene coding the protein |
| name | The protein's short name |
| organism | The organism in which the protein is found |
| primary_accession_number | The protein's UniProt accession number |
| recommended_name | The protein's long/recommended name |
| sequence | The amino acid sequence defining the protein |
例外情况
蛋白质组定义了以下例外：
| Exception | Meaning |
|---|---|
| proteo.exceptions.ProteinNotFoundError | Raised when no protein can be found for the accession number that was provided. |
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