pieriandx web服务的api包装器
pyriandx的Python项目详细描述
pyriandx
pyriandx是pieriandx基因组web服务的api库。
开始
pyriandx可以用作cli工具或库。哦，太棒了！
使用cli
tl；dr
pyriandx --username oldmate@fullysickinstitutiion.com.gov.edu.au --password h4x0r --institution institution-name --json case-file.json my-cool-vcf.vcf
示例case-file.json在pyriandx/json/create_case.json中。
PierianDX API client ::: API wrapper for PierianDx web services
Usage:
pyriandx [-hxv] [--username <username>] [--password <password>] [--output-dir <output-dir>] --institution <institution> --json <json-file> <target-vcf>
Options:
-h, --help Prints this help and exit
-v, --version Prints the version and exits
-b, --base_url Base URL for PierianDX service [default: https://app.uat.pieriandx.com/cgw-api/v2.0.0].
-u, --username=username Username for PierianDX service, usually an email address. Overrides environment if it exists.
-p, --password=password Password for PierianDX service. Overrides environment if it exists.
-j, --json JSON file with details for target
-i, --institution=institution Institution to use for API authentication
-o, --output-dir=output-dir Directory to place downloaded reports. [default: output]
-x, --verbose Make output more verbose innit
Environment variables:
DEBUG_HTTP If defined, prints verbose information for all http transactions
USERNAME If defined, uses this as username for authenticating to PierianDX
PASSWORD If defined, uses this as password for authenticating to PierianDX
BASE_URL If defined, uses this as base URL for PierianDX service
用作模块
检查examples/文件夹以获得一些好的示例代码。
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