ndexgenehancerloader 0.1.0

依赖性

• ndex2
• ndexutil

兼容性

• Python 3.3+

安装

git clone https://github.com/ceofy/ndexgenehancerloader
cd ndexgenehancerloader
make dist
pip install dist/ndexloadgenehancer*whl

运行不带参数的make命令，查看其他构建/部署选项，包括创建Docker映像

输出：

clean                remove all build, test, coverage and Python artifacts
clean-build          remove build artifacts
clean-pyc            remove Python file artifacts
clean-test           remove test and coverage artifacts
lint                 check style with flake8
test                 run tests quickly with the default Python
test-all             run tests on every Python version with tox
coverage             check code coverage quickly with the default Python
docs                 generate Sphinx HTML documentation, including API docs
servedocs            compile the docs watching for changes
testrelease          package and upload a TEST release
release              package and upload a release
dist                 builds source and wheel package
install              install the package to the active Python's site-packages
dockerbuild          build docker image and store in local repository
dockerpush           push image to dockerhub

配置

ndexloadgenehancer.py需要创建以下格式的配置文件。 此配置的默认路径是~/.ndexutils.conf，但可以用重写 ^{cd2}标志。在

配置文件格式

[<value in --profile (default ndexgenehancerloader)>]

user = <NDEx username>
password = <NDEx password>
server = <NDEx server(omit http) ie public.ndexbio.org>

示例配置文件

[ndexgenehancerloader_dev]

user = joe123
password = somepassword123
server = dev.ndexbio.org

所需文件

TODO:添加所需文件的说明

用法

有关信息，请调用ndexloadgenehancer.py -h

示例用法

TODO:添加有关示例用法的信息

ndexloadgenehancer.py # TODO Add other needed arguments here

docker run -v `pwd`:`pwd` -w `pwd` ceofy/ndexgenehancerloader:0.1.0 ndexloadgenehancer.py --conf conf # TODO Add other needed arguments here

学分

此包是用Cookiecutter和audreyr/cookiecutter-pypackage项目模板创建的。在