feature-merge 1.0.1

功能合并

合并gff文件中的功能

安装：

pip install feature-merge

或：

conda install feature-merge

或：

git clone https://github.com/brinkmanlab/feature_merge.git
cd feature_merge
./setup.py install

用法：

feature_merge [-i] [-e] [-x] [-v] [-m merge|append|error|skip|replace] [-f type[,type..]].. <input1> [<input_n>..]
Accepts GFF or GTF format.
-v Print version and exit
-f Comma seperated types of features to merge. Must be terms or accessions from the SOFA sequence ontology, \"ALL\", or \"NONE\". (Can be provided more than once to specify multiple merge groups)
-i Ignore strand, merge feature regardless of strand
-x Only merge features with identical coordinates
-e Exclude component features from output
-m Merge strategy used to deal with id collisions between input files.
    merge: attributes of all features with the same primary key will be merged
    append: entry will have a unique, autoincremented primary key assigned to it (default)
    error: exception will be raised. This means you will have to edit the file yourself to fix the duplicated IDs
    skip: ignore duplicates, emitting a warning
    replace: keep last duplicate

请参阅CONTRIBUTING.rst以获取有关促成此回购协议的信息。