在Python中将不同长度的列表字典写入csv
我现在在处理包含列表的字典时遇到了一些困难。
给我一个这样的字典:
GO_list = {'Seq_A': ['GO:1234', 'GO:2345', 'GO:3456'],
'Seq_B': ['GO:7777', 'GO:8888']}
我想把这个字典写入一个csv文件,格式如下:
编辑 我添加了整个函数以提供更多信息
def map_GI2GO(gilist, mapped, gi_to_go):
with open(gilist) as infile:
read_gi = csv.reader(infile)
GI_list = {rows[0]:rows[1] for rows in read_gi} # read GI list into dictionary
GO_list = defaultdict(list) # set up GO list as empty dictionary of lists
infile.close()
with open(gi_to_go) as mapping:
read_go = csv.reader(mapping, delimiter=',')
for k, v in GI_list.items(): # iterate over GI list and mapping file
for row in read_go:
if len(set(row[0]).intersection(v)) > 0 :
GO_list[k].append(row[1]) # write found GOs into dictionary
break
mapping.close()
with open(mapped, 'wb') as outfile: # save mapped SeqIDs plus GOs
looked_up_go = csv.writer(outfile, delimiter='\t', quoting=csv.QUOTE_MINIMAL)
for key, val in GO_list.iteritems():
looked_up_go.writerow([key] + val)
outfile.close()
但是这样输出的结果是:
Seq_A,GO:1234;GO2345;GO:3456
Seq_B,GO:7777;GO:8888
我希望把列表中的每个条目放在不同的列中,
用一个定义好的分隔符来分开。我很难去掉
那些显然是分隔列表条目的分号(;)。
欢迎任何想法
1 个回答
1
如果我是你,我会试试 itertools 里的 izip_longest,这个可以用来对齐长度不一样的列...
from csv import writer
from itertools import izip_longest
GO_list = {'Seq_A': ['GO:1234', 'GO:2345', 'GO:3456'],
'Seq_B': ['GO:7777', 'GO:8888']}
with open("test.csv","wb") as csvfile:
wr = writer(csvfile)
wr.writerow(GO_list.keys())#writes title row
for each in izip_longest(*GO_list.values()): wr.writerow(each)