用于根据vfdb快速查询程序集的包
vfdbQuer的Python项目详细描述
vfdbquery
要求
- python 3.6
- ncbi-blast+(makeblastdb和blastn必须在$path中)
安装
pip install vfdbQuery
使用量
Usage: vfdbQuery [OPTIONS]
vfdbQuery is a simple script for querying an input genome assembly against
the Virulence Factor Database (VFDB).
Options:
-i, --infile PATH FASTA file that you want to search against VFDB
[required]
-db, --database PATH Path to Virulence Factor Database (VFDB) [required]
--help Show this message and exit.