调用白蚁和texpress的python库及其处理结果
termite-toolkit的Python项目详细描述
项目说明
用于调用SciBite的ner引擎termite的python库，以及用于定义更复杂语义模式的texpress模块。 库还支持对此类请求返回的json进行后处理。
安装
$ pip3 install termite_toolkit
白蚁呼叫示例
fromtermite_toolkitimporttermitefrompprintimportpprint# specify termite API endpointtermite_home="http://localhost:9090/termite"# specify entities to annotateentities="DRUG"# initialise a request buildert=termite.TermiteRequestBuilder()# individually add items to your TERMite requestt.set_url(termite_home)t.set_fuzzy(True)t.set_text("citrate macrophage colony sildenafil stimulating factor influenza hedgehog")t.set_entities(entities)t.set_subsume(True)t.set_input_format("txt")t.set_output_format("doc.jsonx")t.set_reject_ambiguous(False)t.set_options({'fragmentSize':20})# execute the requesttermite_response=t.execute(display_request=True)pprint(termite_response)
调用texpress的示例
frompprintimportpprintfromtermite_toolkitimporttexpress# specify termite API endpointtermite_home="http://localhost:9090/termite"# specify the pattern you wish to search for- this can created in the TERMite UIpattern=":(INDICATION):{0,5}:(GENE)"t=texpress.TexpressRequestBuilder()# individually add items to your TERMite requestt.set_url(termite_home)t.set_text("breast cancer brca1")t.set_subsume(True)t.set_input_format("txt")t.set_output_format("json")t.set_allow_ambiguous(False)t.set_pattern(pattern)# execute the requesttexpress_response=t.execute(display_request=True)pprint(texpress_response)
许可证
知识共享署名非商业共享4.0国际许可。
欢迎加入QQ群-->： 979659372
