一个用于向下采样序列对齐文件的Python包
pydownsampler的Python项目详细描述
用于对序列对齐文件进行下采样的Python包。在
使用
^{pr2}$参数和选项
| Argument/ Option | Description |
|---|---|
| ^{tt1}$ | Show help message to screen. |
| ^{tt2}$ | Show version. |
| ^{tt3}$ | Input BAM/CRAM/SAM file |
| ^{tt4}$ | The coverage you want to downsample to (Required argument) |
| ^{tt5}$ | Output filename prefix (Optional) |
| ^{tt6}$ | Check file coverage |
示例
# option 1 (default): $ pydownsampler input.bam -d 10 In the example above, the file 'input.bam' will be downsampled to 10X coverage. The output filename will be 'input.Downsampled10X.bam'. # option 2 (optional): $ pydownsampler input.bam -d 10 -o downsampled # check coverage of a BAM/CRAM/SAM file $ pydownsampler input.bam -c
许可证
pydownsampler是根据麻省理工学院的许可证慷慨分发的
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