影响图分析、一致性检查、诊断、修复和预测。
ingranalyze的Python项目详细描述
安装
您可以通过运行以下命令安装Ingranalyze:
$ pip3 install --user ingranalyze
在Linux上,可执行脚本可以在~/.local/bin
在macos上,脚本位于/Users/YOURUSERNAME/Library/Python/3.2/bin
下。
用法
典型用法是:
$ ingranalyze.py --mics --repair 5 networkfile observationfile
有关更多选项,您可以按以下方式寻求帮助:
$ ingranalyze.py -h
usage: ingranalyze.py [-h] [--mics] [--repair {1,2,3,4,5}] [--list_repairs] networkfile observationfile
positional arguments:
networkfile influence graph in bioquali format
observationfile observations in bioquali format
optional arguments:
-h, --help show this help message and exit
--mics compute minimal inconsistent cores
--repair {1,2,3,4,5} choose repair method: 1 flip observed variations, 2
flip influences, 3 define network nodes as inputs, 4
define network nodes as input in an experiment (use
only in case of multiple experiments), 5 add
influences. default is 3
--list_repairs compute all minimal repair sets
样本
酵母样本文件可在这里找到:yeast_guelzim.net和yeast_snf2.obs