设计实验来区分交互图模型。
exdesi的Python项目详细描述
安装
您可以通过运行以下命令安装exdesi:
> pip install --user exdesi
在linux上,可执行脚本可以在~/.local/bin
中找到。
在macos上,脚本位于/Users/YOURUSERNAME/Library/Python/3.5/bin
下。
用法
典型用法是:
> exdesi.py candidate_directory experimental_variables_file
有关更多选项,请按以下方式寻求帮助:
> exdesi.py -h
usage: exdesi.py [-h] [--best_set BEST_SET] [-x EXCLUDE] networkfiles experivarfile
positional arguments:
networkfiles directory of influence graphs in SIF format
experivarfile experimental variables
optional arguments:
-h, --help show this help message and exit
--best_set BEST_SET compute best set of experiments maximal number of
experiments, default is OFF, 0=unlimited
-x EXCLUDE, --exclude EXCLUDE
exclude experiments described in file EXCLUDE
示例
data目录中提供的示例文件。 示例调用为:
> exdesi.py in_silico_HEK293/candidates_round1/ in_silico_HEK293/expvars.txt -x in_silico_HEK293/exclude1.txt