CellRanger v3.0.2中emptydrops()的Python实现
emptydrops的Python项目详细描述
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cellrangerv3.0.2中类似empthydrops的cell调用的Python实现
免责声明:
所有代码最初都来自https://github.com/10XGenomics/cellranger,其中 包装和运行在python3下的最小修改。在
用法:
from emptydrops import find_nonambient_barcodes
from emptydrops.matrix import CountMatrix
matrix = CountMatrix.from_legacy_mtx(mtx_dir)
find_nonambient_barcodes(
matrix, # Full expression matrix
orig_cell_bcs, # (iterable of str): Strings of initially-called cell barcodes
min_umi_frac_of_median=0.01,
min_umis_nonambient=500,
max_adj_pvalue=0.01
)
退货:
^{pr2}$- 项目
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