cellsystem 0.4.2

安装

您可以从pypi安装它：

$ pip install cellsystem

示例

存储库中集成的用例：

>>>fromcellsystemimport*# The cell system will simulate cell growth# while tracking the steps in that process.>>>system=CellSystem(grid_shape=(100,100))# Initialize the first cell# in the middle of the grid>>>system.seed()Newcell0added@(50,50)# Take 35 steps forward in time>>>system.run(steps=30)Cellno.0mutating@site(50,50)(fatherNone)Initialmutations:[]Initialgenome:AAAAAAAAAAFinalmutations:[(4,'G')]Finalgenome:AAAAGAAAAACellno.0dividing@(50,50)Newcells:1@(49,50)and2@(50,51)Cellno.2dividing@(50,51)Newcells:3@(51,52)and4@(51,52)Cellno.4mutating@site(51,52)(father2)Initialmutations:[(4,'G')]Initialgenome:AAAAGAAAAAFinalmutations:[(4,'G'),(7,'A')]Finalgenome:AAAAGAAAAACellno.1death@site(49,50)(fatherNone)Cellno.3death@site(51,52)(father2)Cellno.4mutating@site(51,52)(father2)Initialmutations:[(4,'G'),(7,'A')]Initialgenome:AAAAGAAAAAFinalmutations:[(4,'G'),(7,'A'),(2,'T')]Finalgenome:AATAGAAAAACellno.4migratingfromsite(51,52)(father2)Newsite:(50,52).........# Prepare to explore the simulation logs>>>history=system['log']# First, let's see the cells' evolution in time and space!>>>history.worldlines().show()# Remove the cells that died somewhere along the way>>>history.worldlines(prune_death=True).show()

>>>tree_style={'show_leaf_name':True,...'mode':'c',# Circular...'arc_start':-135,# Degrees...'arc_span':270}# Degrees also# Lookup the tree formed by cellular division>>>history.ancestry().show(styling=tree_style)# Now, remove cells that are no longer alive>>>history.ancestry(prune_death=True).show(styling=tree_style)

# Now, check out the tree formed by the mutations>>>history.mutations().show(styling=tree_style)# Remove genomes with no living representatives.>>>history.mutations(prune_death=True).show(styling=tree_style)

几乎模拟的每个方面都是可定制的。你可以添加几种不同类型的相互作用的细胞系， 另外，具有不同几何形状和扩散的世界，具有其他可记录特征的细胞， 其他种类的原木。改变每个细胞的死亡率、移动速度等，甚至增加新的细胞行为！

目前，用于这样做的文档分散在类文档字符串中，但是一个好的开始是 通过监视cellsystem.CellSystem类的源。

元

作者：Ad115-Github–a.garcia230395@gmail.com

根据麻省理工学院的许可证发行。有关详细信息，请参见LICENSE。

贡献

1. 检查打开的问题或打开一个新的问题，开始围绕功能想法或错误的讨论。
2. forkthe repository在github上，开始对从master分支派生的功能分支进行更改。
3. 编写一个测试，显示错误已修复或功能按预期工作。
4. 发送一个pull请求并对维护程序进行bug操作，直到它被合并并发布。