我在gzip中有一个大矩阵,看起来像这样:
locus_1 mark1 0.0,0.0,0.0,0.0,0.0,0.4536,0.8177,0.4929,0.0,0.0
locus_2 mark2 0.0,0.0,0.0,0.0,0.0,0.5536,0.9177,0.2929,0.0,0.0
locus_3 mark2 0.0,0.0,0.1,0.0,0.0,0.9536,0.8177,0.2827,0.0,0.0
因此,每一行都以两个描述符开头,后跟10个值。在
我只想解析出这行的前5个值,这样我就有了这样一个矩阵:
^{pr2}$我编写了以下python脚本来解析它,但是没有用:
import gzip
import numpy as np
inFile = gzip.open('/home/anish/data.gz')
inFile.next()
for line in inFile:
cols = line.strip().replace('nan','0').split('\t')
data = cols[2:]
data = map(float,data)
gfpVals = data[:5]
print '\t'.join(cols[:6]) + '\t' + '\t'.join(map(str,gfpVals))
我只是得到了一个错误:
data = map(float,data)
ValueError: could not convert string to float:
您只使用制表符作为分隔符,而值也用逗号分隔。在
结果呢
分成
^{pr2}$你要让绳子浮起来
它是无效的文本。在
您应该替换:
^{4}$与
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