无法使用sudo pip3 install networki安装Networkit

Collecting networkit Downloading networkit-4.1.1.tar.gz (936kB) 100% |████████████████████████████████| 942kB 1.6MB/s Installing collected packages: networkit Running setup.py install for networkit ... error Complete output from command /Library/Frameworks/Python.framework/Versions/3.5/bin/python3.5 -u -c "import setuptools, tokenize;__file__='/private/tmp/pip-build-p2tcuarv/networkit/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-ac3b1wc7-record/install-record.txt --single-version-externally-managed --compile: /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/Cython/Distutils/old_build_ext.py:30: UserWarning: Cython.Distutils.old_build_ext does not properly handle dependencies and is deprecated. "Cython.Distutils.old_build_ext does not properly handle dependencies " running install running build running build_py creating build creating build/lib.macosx-10.6-intel-3.5 creating build/lib.macosx-10.6-intel-3.5/networkit copying networkit/__init__.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/algebraic.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/centrality.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/clique.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/coarsening.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/coloring.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/community.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/components.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/correlation.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/distance.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/dynamic.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/engineering.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/flow.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/generators.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/GEXFIO.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/globals.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/graph.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/graphio.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/GraphMLIO.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/linkprediction.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/matching.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/nxadapter.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/partitioning.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/plot.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/sampling.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/scd.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/simulation.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/sparsification.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/stats.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/stopwatch.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/structures.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/viztasks.py -> build/lib.macosx-10.6-intel-3.5/networkit copying networkit/workflows.py -> build/lib.macosx-10.6-intel-3.5/networkit creating build/lib.macosx-10.6-intel-3.5/networkit/gephi copying networkit/gephi/__init__.py -> build/lib.macosx-10.6-intel-3.5/networkit/gephi copying networkit/gephi/csv.py -> build/lib.macosx-10.6-intel-3.5/networkit/gephi copying networkit/gephi/pyclient.py -> build/lib.macosx-10.6-intel-3.5/networkit/gephi copying networkit/gephi/streaming.py -> build/lib.macosx-10.6-intel-3.5/networkit/gephi creating build/lib.macosx-10.6-intel-3.5/networkit/profiling copying networkit/profiling/__init__.py -> build/lib.macosx-10.6-intel-3.5/networkit/profiling copying networkit/profiling/job.py -> build/lib.macosx-10.6-intel-3.5/networkit/profiling copying networkit/profiling/multiprocessing_helper.py -> build/lib.macosx-10.6-intel-3.5/networkit/profiling copying networkit/profiling/plot.py -> build/lib.macosx-10.6-intel-3.5/networkit/profiling copying networkit/profiling/profiling.py -> build/lib.macosx-10.6-intel-3.5/networkit/profiling copying networkit/profiling/stat.py -> build/lib.macosx-10.6-intel-3.5/networkit/profiling creating build/lib.macosx-10.6-intel-3.5/networkit/test copying networkit/test/__init__.py -> build/lib.macosx-10.6-intel-3.5/networkit/test copying networkit/test/test_algorithms.py -> build/lib.macosx-10.6-intel-3.5/networkit/test copying networkit/test/test_community.py -> build/lib.macosx-10.6-intel-3.5/networkit/test copying networkit/test/test_graphio.py -> build/lib.macosx-10.6-intel-3.5/networkit/test copying networkit/test/test_sparsification.py -> build/lib.macosx-10.6-intel-3.5/networkit/test creating build/lib.macosx-10.6-intel-3.5/networkit/test/extension copying networkit/test/extension/__init__.py -> build/lib.macosx-10.6-intel-3.5/networkit/test/extension copying networkit/test/extension/test.py -> build/lib.macosx-10.6-intel-3.5/networkit/test/extension creating build/lib.macosx-10.6-intel-3.5/networkit/test/gephi copying networkit/test/gephi/__init__.py -> build/lib.macosx-10.6-intel-3.5/networkit/test/gephi creating build/lib.macosx-10.6-intel-3.5/networkit/profiling/html copying networkit/profiling/html/measure.html -> build/lib.macosx-10.6-intel-3.5/networkit/profiling/html copying networkit/profiling/html/overlay.html -> build/lib.macosx-10.6-intel-3.5/networkit/profiling/html copying networkit/profiling/html/profile.html -> build/lib.macosx-10.6-intel-3.5/networkit/profiling/html copying networkit/profiling/html/profiling.css -> build/lib.macosx-10.6-intel-3.5/networkit/profiling/html copying networkit/profiling/html/profiling.js -> build/lib.macosx-10.6-intel-3.5/networkit/profiling/html creating build/lib.macosx-10.6-intel-3.5/networkit/profiling/latex copying networkit/profiling/latex/measure.tex -> build/lib.macosx-10.6-intel-3.5/networkit/profiling/latex copying networkit/profiling/latex/profile.tex -> build/lib.macosx-10.6-intel-3.5/networkit/profiling/latex creating build/lib.macosx-10.6-intel-3.5/networkit/profiling/description copying networkit/profiling/description/descriptions.txt -> build/lib.macosx-10.6-intel-3.5/networkit/profiling/description running build_ext initializing NetworKit compilation with: scons --optimize=Opt --target=Core -j8 --compiler=g++-4.8 --std=c++11 scons: Reading SConscript files ... scons: done reading SConscript files. scons: Building targets ... g++-4.8 -o .buildOpt/algebraic/AdjacencyMatrix.o -c -std=c++11 -Wall -c -fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO networkit/cpp/algebraic/AdjacencyMatrix.cpp g++-4.8 -o .buildOpt/algebraic/CSRMatrix.o -c -std=c++11 -Wall -c -fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO networkit/cpp/algebraic/CSRMatrix.cpp g++-4.8 -o .buildOpt/algebraic/DenseMatrix.o -c -std=c++11 -Wall -c -fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO networkit/cpp/algebraic/DenseMatrix.cpp g++-4.8 -o .buildOpt/algebraic/DiagonalMatrix.o -c -std=c++11 -Wall -c -fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO networkit/cpp/algebraic/DiagonalMatrix.cpp g++-4.8 -o .buildOpt/algebraic/IncidenceMatrix.o -c -std=c++11 -Wall -c -fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO networkit/cpp/algebraic/IncidenceMatrix.cpp g++-4.8 -o .buildOpt/algebraic/LaplacianMatrix.o -c -std=c++11 -Wall -c -fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO networkit/cpp/algebraic/LaplacianMatrix.cpp g++-4.8 -o .buildOpt/algebraic/Matrix.o -c -std=c++11 -Wall -c -fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO networkit/cpp/algebraic/Matrix.cpp g++-4.8 -o .buildOpt/algebraic/NormalizedLaplacianMatrix.o -c -std=c++11 -Wall -c -fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO networkit/cpp/algebraic/NormalizedLaplacianMatrix.cpp /var/tmp//ccFjDjJZ.s:17:expecting string instruction after `rep' /var/tmp//ccFjDjJZ.s:56:expecting string instruction after `rep' scons: *** [.buildOpt/algebraic/DenseMatrix.o] Error 1 /var/tmp//cch6WQOj.s:17:expecting string instruction after `rep' /var/tmp//cch6WQOj.s:56:expecting string instruction after `rep' /var/tmp//cch6WQOj.s:3864:expecting string instruction after `rep' /var/tmp//cch6WQOj.s:3869:expecting string instruction after `rep' scons: *** [.buildOpt/algebraic/Matrix.o] Error 1 /var/tmp//ccjOB51r.s:17:expecting string instruction after `rep' scons: *** [.buildOpt/algebraic/CSRMatrix.o] Error 1 scons: building terminated because of errors. scons returned an error, exiting setup.py ---------------------------------------- Command "/Library/Frameworks/Python.framework/Versions/3.5/bin/python3.5 -u -c "import setuptools, tokenize;__file__='/private/tmp/pip-build-p2tcuarv/networkit/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-ac3b1wc7-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/tmp/pip-build-p2tcuarv/networkit/

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1楼 · 编辑于 2024-04-25 21:33:14

这可能和你使用OSX有关。我有很多问题。NetworKit的一个常见问题是，安装会给MacOSX带来许多奇怪的问题。在

试着遵循这些建议，或者看看我做了什么可以帮助你解决问题。在

使用ARCHFLAGS=“-arch x86_64”标志-这是已知的修复某些Mac配置设置
使用c/c++编译器gcc-4（我推荐gcc4.8，但4.9应该没问题） -更新。我使用gcc-6[我的版本：没有multilib的自制gcc 6.2.0]成功地遵循了本指南，所以如果您想使用gcc-6，应该没问题。-在
确保您拥有所有依赖项
使用现代Python3（例如最新的3.5）

这里有一个可能的分步指南，可能会帮助你。在

步骤1：确保安装了gcc-4.8或gcc-4.9，并且安装了现代python3:例如：

$ gcc-4.8  version
gcc-4.8 (Homebrew gcc48 4.8.5) 4.8.5 ....
$ python3  version
Python 3.5.2

（如果您没有安装这些，我建议您使用自制软件安装

^{pr2}$

）

如果需要自制，请参阅http://brew.sh/或直接运行：

$ /usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"

）

第2步：在家中编辑.profile或.bash_profile脚本（~），以便终端具有安装NetworKit的有用设置。例如：

Dir$ echo $HOME  # Check what this is set to   it should be similar for you
/Users/GFenn
Dir$ echo ~  # this should be the same as above
/Users/GFenn
Dir$ cd
~$ nano .profile #[or use "vim" or "echo >> " if you prefer]

##WHILE IN .profile (or whatever), ADD THE FOLLOWING LINES AT THE END
# Temporary configurations to help install NetworKit
CC="gcc-4.8"
CXX="g++-4.8"
ARCHFLAGS="-arch x86_64"
alias gcc="gcc-4.8"
alias g++="g++4.8"
##WHEN NETWORKIT IS INSTALLED, YOU CAN DELETE THESE LINES OR COMMENT OUT WITH #s

步骤3：加载这些设置。简单-只需关闭并重新打开终端

$ exit

步骤4：安装依赖的或有用的python3模块：

 $ sudo pip3 install pandas seaborn scipy numpy matplotlib tabulate networkx cython sklearn ipython

（如果你已经有了这些模块，你不必担心：但是如果你想确保你有新的模块：

$ sudo pip3 install  upgrade  force-reinstall pandas seaborn scipy numpy matplotlib tabulate networkx cython sklearn ipython

）

第五步：下载源代码。[我发现这比pip3有更好的帮助：但是如果您愿意，请先尝试简单的方法'$sudo pip3 install networkit'！]在

EITHER: Go to https://networkit.iti.kit.edu/get_started.html and scroll to "Build NetworKit from Source" and loop for the source code download
OR: just open https://networkit.iti.kit.edu/uploads/NetworKit.zip to download [works as of 13th Nov 2016]

（下载需要2-5分钟）

步骤6：安装。（信息基于https://networkit.iti.kit.edu/get_started.html>；Build NetworKit from Source>；Building NetworKit中的提示）

$ cd ~/Downloads
$ open NetworKit.zip #[if you need to unzip to source code]
$ cd NetworKit #[switch to the top folder of NetworKit]
$ sudo python3 setup.py build_ext  inplace #[run the script setup.py]

（步骤6需要5-10分钟。）

第七步：看看是否有效。再次关闭终端（例如，单击“退出终端”或运行“$exit”）。重新打开并移回~/Downloads/NetworKit目录。例如，我有以下内容：

$ python3
[GCC 4.2.1 Compatible Apple LLVM 8.0.0 (clang-800.0.38)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import networkit
/usr/local/lib/python3.5/site-packages/IPython/html.py:14: ShimWarning: The `IPython.html` package has been deprecated. You should import from `notebook` instead. `IPython.html.widgets` has moved to `ipywidgets`.
  "`IPython.html.widgets` has moved to `ipywidgets`.", ShimWarning)
>>> G = networkit.Graph(5)
>>> G.addEdge(0,1)
<_NetworKit.Graph object at 0x11405f1b0>
>>> G.toString()
b'Graph(name=G#3, n=5, m=1)'
>>> G.nodes()
[0, 1, 2, 3, 4]
>>> G.edges()
[(1, 0)]
>>> G.neighbors(3)
[]
>>> from networkit.generators import BarabasiAlbertGenerator
>>> g = BarabasiAlbertGenerator(5, 50, 8).generate()
>>> g.nodes()
[0, 1, 2, ...., 49]
>>> g.neighbors(5)
[4, 6, 21, 31, 38, 47]  # Will probably be different for you.
>>> quit()
$

如果上面一切都正常。祝贺你。如果没有，我很抱歉。。安装这样的东西可不容易啊！希望上面的一些提示和技巧将在您的最终解决方案中对如何安装它有所帮助。在

第8步：确认位置。步骤7成功后，我发现模块没有正确定位。要查看是否存在相同的问题，请转到新目录并重复步骤7。例如，以下情况会引发导入错误：

$ cd ~
$ python3
>>> import networkit
ImportErrors..

来解决这个问题。您需要将整个NetworKit目录移动到python3可以找到的位置。你可以把它移到

/usr/local/lib/python3.5/site-packages/

这是python3寻找模块的地方之一。如果使用此方法，应使用以下命令将/usr/local/lib/python3.5/site-packages/networkit添加到PYTHONPATH：

$ export PYTHONPATH=$PYTHONPATH:/usr/local/lib/python3.5/site-packages/networkit  # To make this change permanent, add this line to your ~/.profile file.

但是，我推荐的第8步方法如下：

- $ mkdir ~/Documents/MyPython3Modules   # create a place to save your own built modules   you can do this step with the Finder app too
- copy/drag the NetworKit folder (~/Downloads/NetworKit) to the new MyPython3Modules folder. I found this is easier with the Finder.
- edit your .profile file from the Terminal
~$ nano .profile  # or .bash_profile or whatever
##Add the following lines
export PYTHONPATH=$PYTHONPATH:~/Documents/MyPython3Modules  # Now any module import statements will look here too.
export PYTHONPATH=$PYTHONPATH:~/Documents/MyPython3Modules/NetworKit   
# or replace '~' with '/Users/GFenn' or whatever
$

（第二个PYTHONPATH附件的原因是NetworKit是一个目录，里面有实际的NetworKit模块[它调用NetworKit中的对象，所以您不能只移动NetworKit而不是整个NetworKit]！）在

第九步：确认成功。再次关闭终端并重新打开。转到一个新的目录，远离Downloads和MyPython3Modules，然后查看：

$ cd ~
$ cd Documents/Junk_dir  # Junk_dir is a boring folder in Documents
$ python3
>>> import networkit
/usr/local/Cellar/python3/3.5.2_3/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/IPython/html.py:14: ShimWarning: The `IPython.html` package has been deprecated. You should import from `notebook` instead. `IPython.html.widgets` has moved to `ipywidgets`.
 "`IPython.html.widgets` has moved to `ipywidgets`.", ShimWarning)
>>> G = networkit.Graph(5)  # etc
>>> # all good
>>> quit()
$

希望这本指南能有所帮助。在

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